PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678432994
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family AP2
Protein Properties Length: 426aa    MW: 47664.7 Da    PI: 7.3567
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678432994genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-17138187155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  678432994 138 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 187
                78*******************......55************************998 PP

2AP245.51.9e-14230280155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k+ g
  678432994 230 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKYSG 280
                89********.7******5553..2.26**********99************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.51E-11138195No hitNo description
SuperFamilySSF541716.15E-16138196IPR016177DNA-binding domain
PfamPF008471.9E-9138187IPR001471AP2/ERF domain
PROSITE profilePS5103217.728139195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-17139195IPR001471AP2/ERF domain
SMARTSM003802.1E-31139201IPR001471AP2/ERF domain
CDDcd000181.06E-23230290No hitNo description
SuperFamilySSF541711.96E-17230290IPR016177DNA-binding domain
PfamPF008471.1E-9230280IPR001471AP2/ERF domain
PROSITE profilePS5103215.988231288IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-16231288IPR001471AP2/ERF domain
SMARTSM003807.4E-30231294IPR001471AP2/ERF domain
PRINTSPR003673.4E-6232243IPR001471AP2/ERF domain
PRINTSPR003673.4E-6270290IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MWDLNGAPDE EGDKESVEKG KCVVSVSNSG SSAAEDGSET EYRGDGRRRR SRVFGFSMAQ  60
SYDEDFSGTS SSPVTRHFFP VDDTEPLGGG EEPLDFPRAA HWVGVKFGGD LQGGAEKPFL  120
ESLQPLKKNR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR  180
AAIKFRGLEA DINFDLEDYE DDLKKMKNLT KEEFVHVLRR QSTGFPKGSS KYRGVTLHKC  240
GRWEARMGQF LGKKYVYLGL FDTEIEAARA YDKAAIKYSG KEAVTNFDPS VYEDELKPVA  300
SETECSTAEH NLDLSLGRTQ STKNQSDAEA VGRKSSETHM IQATNGSFAT PLECYNMGYQ  360
QAARRNDQRQ IQMNHRRPFA AASSGFPQPQ NWLSRNGNPP HEHTFVIPFS PSTSSGCHVF  420
MSSADR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099110.11e-129PREDICTED: floral homeotic protein APETALA 2-like isoform X1
RefseqXP_011099111.11e-129PREDICTED: floral homeotic protein APETALA 2-like isoform X2
SwissprotP479271e-113AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLS8CKU51e-132S8CKU5_9LAMI; Uncharacterized protein
STRINGVIT_07s0031g00220.t011e-121(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-112AP2 family protein